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UBC Theses and Dissertations

Characterizing single neuron activity patterns and dynamics using multi-scale spontaneous neuronal activity recordings of cat and mouse cortex Mitelut, Catalin C.


Throughout most of the 20th century the brain has been studied as a reflexive system with ever improving recording methods being applied within a variety of sensory and behavioural paradigms. Yet the brains of most animals (and all mammals) are spontaneously active with incoming sensory stimuli modulating rather than driving neural activity. The aim of this thesis is to characterize spontaneous neural activity across multiple temporal and spatial scales relying on biophysical simulations, experiments and analysis of recordings from the visual cortex of cats and dorsal cortex and thalamus of mouse. Biophysically detailed simulations yielded novel datasets for testing spike sorting algorithms which are critical for isolating single neuron activity. Sorting algorithms tested provided low error rates with operator skill being as important as sorting suite. Simulated datasets have similar characteristics to in vivo acquired data and ongoing larger-scope efforts are proposed for developing the next generation of spike sorting algorithms and extracellular probes. Single neuron spontaneous activity was correlated to dorsal cortex neural activity in mice. Spike-triggered-maps revealed that spontaneously firing cortical neurons were co-activated with homotopic and mono-synaptically connected cortical areas, whereas thalamic neurons co-activated with more diversely connected areas. Both bursting and tonic firing modes yielded similar maps and the time courses of spike-triggered-maps revealed distinct patterns suggesting such dynamics may constitute intrinsic single neuron properties. The mapping technique extends previous work to further link spontaneous neural activity across temporal and spatial scales and suggests additional avenues of investigation. Synchronized state cat visual and mouse sensory cortex electrophysiological recordings revealed that spontaneously occurring activity UP-state transitions fall into stereotyped classes of events that can be grouped. Single visual cortex neurons active during UP-state transitions fire in a partially preserved order extending previous findings on high firing rate neurons in rat somatosensory and auditory cortex. The firing order for many neurons changes over periods longer than 30-minutes suggesting a complex non-stationary temporal neural code may underlie spontaneous and stimulus evoked neural activity. This thesis shows that ongoing spontaneous brain activity contains substantial structure that can be used to further our understanding of brain function.

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