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The pharmacogenomics of vincristine-induced neurotoxicity in paediatric cancer patients with Wilms tumor or rhabdomyosarcoma Loo, Tenneille
Abstract
Vincristine is one of the most effective and widely utilized antineoplastic agents.
However, the clinical utility of this drug is limited by severely debilitating vincristineinduced
neurotoxicities (VIN). Previous studies have associated VIN with genetic
polymorphisms in genes involved in the metabolism and transportation of vincristine,
including CYP3A4, CYP3A5, and ABCB1. However, the findings of such studies have not
been consistently reproduced. This study hypothesizes that there are specific variants in
genes involved in general drug absorption, metabolism, distribution, excretion, and toxicity
(ADME-Tox) that affect the individual susceptibility to VIN in patients with Wilms tumor
and rhabdomyosarcoma.
Detailed clinical data was collected from 140 patients with Wilms tumor and
rhabdomyosarcoma by retrospective chart review. VIN cases were characterized by type of
neurotoxicity, and severity was evaluated using a validated clinical grading system for
adverse events (NCI-CTCAE v4.03). A customized Illumina GoldenGate Panel was used to
genotype 4,536 single nucleotide polymorphisms (SNPs) in candidate genes involved in the
metabolism and transportation pathway of vincristine, as well as in genes broadly involved in
ADME-Tox.
None of the SNPs that were previously reported to be associated with VIN were
found to be significantly associated (p-value < 0.05). With similar effect sizes, six novel
genetic variants in five genes (PON1, ABCA4, ABCG1, CY51A1, SLCO1C1) were
significantly associated with VIN in both tumor types. Whereas none of these genes have
been previously associated with VIN or the biotransformation of vincristine, interestingly,the biological functions of the encoded proteins have been indirectly linked to nerve function,
neuropathy, or neurodegenerative diseases. Therefore, I hypothesize that the genetic basis of
VIN is likely polygenic and that the six genes influence individual susceptibility to VIN by
affecting: nerve regeneration (PON1, PPP1R9A), and cholesterol homeostasis and
remyelination (ABCA4, ABCG1, CYP51A1), as well as the metabolism of vincristine (PON1,
CYP51A1) and the transportation of lipids, vincristine, metabolites, or neuroprotectants
(SLCO1C1, ABCA4, ABCG1).
This study adds to the literature by identifying new potential biomarkers for VIN,
providing novel hypotheses for the mechanisms underlying VIN susceptibility, and is a point
of origin for replication studies.
Item Metadata
| Title |
The pharmacogenomics of vincristine-induced neurotoxicity in paediatric cancer patients with Wilms tumor or rhabdomyosarcoma
|
| Creator | |
| Publisher |
University of British Columbia
|
| Date Issued |
2011
|
| Description |
Vincristine is one of the most effective and widely utilized antineoplastic agents.
However, the clinical utility of this drug is limited by severely debilitating vincristineinduced
neurotoxicities (VIN). Previous studies have associated VIN with genetic
polymorphisms in genes involved in the metabolism and transportation of vincristine,
including CYP3A4, CYP3A5, and ABCB1. However, the findings of such studies have not
been consistently reproduced. This study hypothesizes that there are specific variants in
genes involved in general drug absorption, metabolism, distribution, excretion, and toxicity
(ADME-Tox) that affect the individual susceptibility to VIN in patients with Wilms tumor
and rhabdomyosarcoma.
Detailed clinical data was collected from 140 patients with Wilms tumor and
rhabdomyosarcoma by retrospective chart review. VIN cases were characterized by type of
neurotoxicity, and severity was evaluated using a validated clinical grading system for
adverse events (NCI-CTCAE v4.03). A customized Illumina GoldenGate Panel was used to
genotype 4,536 single nucleotide polymorphisms (SNPs) in candidate genes involved in the
metabolism and transportation pathway of vincristine, as well as in genes broadly involved in
ADME-Tox.
None of the SNPs that were previously reported to be associated with VIN were
found to be significantly associated (p-value < 0.05). With similar effect sizes, six novel
genetic variants in five genes (PON1, ABCA4, ABCG1, CY51A1, SLCO1C1) were
significantly associated with VIN in both tumor types. Whereas none of these genes have
been previously associated with VIN or the biotransformation of vincristine, interestingly,the biological functions of the encoded proteins have been indirectly linked to nerve function,
neuropathy, or neurodegenerative diseases. Therefore, I hypothesize that the genetic basis of
VIN is likely polygenic and that the six genes influence individual susceptibility to VIN by
affecting: nerve regeneration (PON1, PPP1R9A), and cholesterol homeostasis and
remyelination (ABCA4, ABCG1, CYP51A1), as well as the metabolism of vincristine (PON1,
CYP51A1) and the transportation of lipids, vincristine, metabolites, or neuroprotectants
(SLCO1C1, ABCA4, ABCG1).
This study adds to the literature by identifying new potential biomarkers for VIN,
providing novel hypotheses for the mechanisms underlying VIN susceptibility, and is a point
of origin for replication studies.
|
| Genre | |
| Type | |
| Language |
eng
|
| Date Available |
2011-08-10
|
| Provider |
Vancouver : University of British Columbia Library
|
| Rights |
Attribution-NonCommercial-NoDerivs 3.0 Unported
|
| DOI |
10.14288/1.0072033
|
| URI | |
| Degree (Theses) | |
| Program (Theses) | |
| Affiliation | |
| Degree Grantor |
University of British Columbia
|
| Graduation Date |
2011-11
|
| Campus | |
| Scholarly Level |
Graduate
|
| Rights URI | |
| Aggregated Source Repository |
DSpace
|
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Attribution-NonCommercial-NoDerivs 3.0 Unported