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Lung Spatial Profiling Reveals a T Cell Signature in COPD Patients with Fatal SARS-CoV-2 Infection Yang, Chen Xi; Tomchaney, Michael; Landecho, Manuel F.; Zamacona, Borja R.; Marin Oto, Marta; Zulueta, Javier; Malo, Joshua; Knoper, Steve; Contoli, Marco; Papi, Alberto; Vasilescu, Dragos; Sauler, Maor; Straub, Christof; Tan, Cheryl; Martinez, Fernando D.; Bhattacharya, Deepta; Rosas, Ivan O.; Kheradmand, Farrah; Hackett, Tillie-Louise; Polverino, Francesca
Abstract
People with pre-existing lung diseases such as chronic obstructive pulmonary disease (COPD) are more likely to get very sick from SARS-CoV-2 disease 2019 (COVID-19). Still, an interrogation of the immune response to COVID-19 infection, spatially throughout the lung structure, is lacking in patients with COPD. For this study, we characterized the immune microenvironment of the lung parenchyma, airways, and vessels of never- and ever-smokers with or without COPD, all of whom died of COVID-19, using spatial transcriptomic and proteomic profiling. The parenchyma, airways, and vessels of COPD patients, compared to control lungs had (1) significant enrichment for lung-resident CD45RO+ memory CD4+ T cells; (2) downregulation of genes associated with T cell antigen priming and memory T cell differentiation; and (3) higher expression of proteins associated with SARS-CoV-2 entry and primary receptor ubiquitously across the ROIs and in particular the lung parenchyma, despite similar SARS-CoV-2 structural gene expression levels. In conclusion, the lung parenchyma, airways, and vessels of COPD patients have increased T-lymphocytes with a blunted memory CD4 T cell response and a more invasive SARS-CoV-2 infection pattern and may underlie the higher death toll observed with COVID-19.
Item Metadata
Title |
Lung Spatial Profiling Reveals a T Cell Signature in COPD Patients with Fatal SARS-CoV-2 Infection
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Creator |
Yang, Chen Xi; Tomchaney, Michael; Landecho, Manuel F.; Zamacona, Borja R.; Marin Oto, Marta; Zulueta, Javier; Malo, Joshua; Knoper, Steve; Contoli, Marco; Papi, Alberto; Vasilescu, Dragos; Sauler, Maor; Straub, Christof; Tan, Cheryl; Martinez, Fernando D.; Bhattacharya, Deepta; Rosas, Ivan O.; Kheradmand, Farrah; Hackett, Tillie-Louise; Polverino, Francesca
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Contributor | |
Publisher |
Multidisciplinary Digital Publishing Institute
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Date Issued |
2022-06-07
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Description |
People with pre-existing lung diseases such as chronic obstructive pulmonary disease (COPD) are more likely to get very sick from SARS-CoV-2 disease 2019 (COVID-19). Still, an interrogation of the immune response to COVID-19 infection, spatially throughout the lung structure, is lacking in patients with COPD. For this study, we characterized the immune microenvironment of the lung parenchyma, airways, and vessels of never- and ever-smokers with or without COPD, all of whom died of COVID-19, using spatial transcriptomic and proteomic profiling. The parenchyma, airways, and vessels of COPD patients, compared to control lungs had (1) significant enrichment for lung-resident CD45RO+ memory CD4+ T cells; (2) downregulation of genes associated with T cell antigen priming and memory T cell differentiation; and (3) higher expression of proteins associated with SARS-CoV-2 entry and primary receptor ubiquitously across the ROIs and in particular the lung parenchyma, despite similar SARS-CoV-2 structural gene expression levels. In conclusion, the lung parenchyma, airways, and vessels of COPD patients have increased T-lymphocytes with a blunted memory CD4 T cell response and a more invasive SARS-CoV-2 infection pattern and may underlie the higher death toll observed with COVID-19.
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Subject | |
Genre | |
Type | |
Language |
eng
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Date Available |
2022-08-10
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Provider |
Vancouver : University of British Columbia Library
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Rights |
CC BY 4.0
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DOI |
10.14288/1.0416756
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URI | |
Affiliation | |
Citation |
Cells 11 (12): 1864 (2022)
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Publisher DOI |
10.3390/cells11121864
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Peer Review Status |
Reviewed
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Scholarly Level |
Faculty; Researcher
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Rights URI | |
Aggregated Source Repository |
DSpace
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Item Media
Item Citations and Data
Rights
CC BY 4.0