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Common variants in breast cancer risk loci predispose to distinct tumor subtypes Ahearn, Thomas U.; Zhang, Haoyu; Michailidou, Kyriaki; Milne, Roger L.; Bolla, Manjeet K.; Dennis, Joe; Dunning, Alison M.; Lush, Michael; Wang, Qin; Andrulis, Irene L.; Anton-Culver, Hoda; Arndt, Volker; Aronson, Kristan J.; Auer, Paul L.; Augustinsson, Annelie; Baten, Adinda; Becher, Heiko; Behrens, Sabine; Benitez, Javier; Bermisheva, Marina; Blomqvist, Carl; Bojesen, Stig E.; Bonanni, Bernardo; Børresen-Dale, Anne-Lise; Brauch, Hiltrud; Brenner, Hermann; Brooks-Wilson, Angela; Brüning, Thomas; Burwinkel, Barbara; Buys, Saundra S.; Canzian, Federico; Castelao, Jose E.; Chang-Claude, Jenny; Chanock, Stephen J.; Chenevix-Trench, Georgia; Clarke, Christine L.; Collée, J. M.; Cox, Angela; Cross, Simon S.; Czene, Kamila; Daly, Mary B.; Devilee, Peter; Dörk, Thilo; Dwek, Miriam; Eccles, Diana M.; Evans, D. G.; Fasching, Peter A.; Figueroa, Jonine; Floris, Giuseppe; Gago-Dominguez, Manuela; Gapstur, Susan M.; García-Sáenz, José A.; Gaudet, Mia M.; Giles, Graham G.; Goldberg, Mark S.; González-Neira, Anna; Alnæs, Grethe I. G.; Grip, Mervi; Guénel, Pascal; Haiman, Christopher A.; Hall, Per; Hamann, Ute; Harkness, Elaine F.; Heemskerk-Gerritsen, Bernadette A. M.; Holleczek, Bernd; Hollestelle, Antoinette; Hooning, Maartje J.; Hoover, Robert N.; Hopper, John L.; Howell, Anthony; Jakimovska, Milena; Jakubowska, Anna; John, Esther M.; Jones, Michael E.; Jung, Audrey; Kaaks, Rudolf; Kauppila, Saila; Keeman, Renske; Khusnutdinova, Elza; Kitahara, Cari M.; Ko, Yon-Dschun; Koutros, Stella; Kristensen, Vessela N.; Krüger, Ute; Kubelka-Sabit, Katerina; Kurian, Allison W.; Kyriacou, Kyriacos; Lambrechts, Diether; Lee, Derrick G.; Lindblom, Annika; Linet, Martha; Lissowska, Jolanta; Llaneza, Ana; Lo, Wing-Yee; MacInnis, Robert J.; Mannermaa, Arto; Manoochehri, Mehdi; Margolin, Sara; Martinez, Maria E.; McLean, Catriona; Meindl, Alfons; Menon, Usha; Nevanlinna, Heli; Newman, William G.; Nodora, Jesse; Offit, Kenneth; Olsson, Håkan; Orr, Nick; Park-Simon, Tjoung-Won; Patel, Alpa V.; Peto, Julian; Pita, Guillermo; Plaseska-Karanfilska, Dijana; Prentice, Ross; Punie, Kevin; Pylkäs, Katri; Radice, Paolo; Rennert, Gad; Romero, Atocha; Rüdiger, Thomas; Saloustros, Emmanouil; Sampson, Sarah; Sandler, Dale P.; Sawyer, Elinor J.; Schmutzler, Rita K.; Schoemaker, Minouk J.; Schöttker, Ben; Sherman, Mark E.; Shu, Xiao-Ou; Smichkoska, Snezhana; Southey, Melissa C.; Spinelli, John, 1955-; Swerdlow, Anthony J.; Tamimi, Rulla M.; Tapper, William J.; Taylor, Jack A.; Teras, Lauren R.; Terry, Mary B.; Torres, Diana; Troester, Melissa A.; Vachon, Celine M.; van Deurzen, Carolien H. M.; van Veen, Elke M.; Wagner, Philippe; Weinberg, Clarice R.; Wendt, Camilla; Wesseling, Jelle; Winqvist, Robert; Wolk, Alicja; Yang, Xiaohong R.; Zheng, Wei; Couch, Fergus J.; Simard, Jacques; Kraft, Peter; Easton, Douglas F.; Pharoah, Paul D. P.; Schmidt, Marjanka K.; García-Closas, Montserrat; Chatterjee, Nilanjan

Abstract

Background Genome-wide association studies (GWAS) have identified multiple common breast cancer susceptibility variants. Many of these variants have differential associations by estrogen receptor (ER) status, but how these variants relate with other tumor features and intrinsic molecular subtypes is unclear. Methods Among 106,571 invasive breast cancer cases and 95,762 controls of European ancestry with data on 173 breast cancer variants identified in previous GWAS, we used novel two-stage polytomous logistic regression models to evaluate variants in relation to multiple tumor features (ER, progesterone receptor (PR), human epidermal growth factor receptor 2 (HER2) and grade) adjusting for each other, and to intrinsic-like subtypes. Results Eighty-five of 173 variants were associated with at least one tumor feature (false discovery rate 

Item Metadata

Title
Common variants in breast cancer risk loci predispose to distinct tumor subtypes
Creator
Ahearn, Thomas U.; Zhang, Haoyu; Michailidou, Kyriaki; Milne, Roger L.; Bolla, Manjeet K.; Dennis, Joe; Dunning, Alison M.; Lush, Michael; Wang, Qin; Andrulis, Irene L.; Anton-Culver, Hoda; Arndt, Volker; Aronson, Kristan J.; Auer, Paul L.; Augustinsson, Annelie; Baten, Adinda; Becher, Heiko; Behrens, Sabine; Benitez, Javier; Bermisheva, Marina; Blomqvist, Carl; Bojesen, Stig E.; Bonanni, Bernardo; Børresen-Dale, Anne-Lise; Brauch, Hiltrud; Brenner, Hermann; Brooks-Wilson, Angela; Brüning, Thomas; Burwinkel, Barbara; Buys, Saundra S.; Canzian, Federico; Castelao, Jose E.; Chang-Claude, Jenny; Chanock, Stephen J.; Chenevix-Trench, Georgia; Clarke, Christine L.; Collée, J. M.; Cox, Angela; Cross, Simon S.; Czene, Kamila; Daly, Mary B.; Devilee, Peter; Dörk, Thilo; Dwek, Miriam; Eccles, Diana M.; Evans, D. G.; Fasching, Peter A.; Figueroa, Jonine; Floris, Giuseppe; Gago-Dominguez, Manuela; Gapstur, Susan M.; García-Sáenz, José A.; Gaudet, Mia M.; Giles, Graham G.; Goldberg, Mark S.; González-Neira, Anna; Alnæs, Grethe I. G.; Grip, Mervi; Guénel, Pascal; Haiman, Christopher A.; Hall, Per; Hamann, Ute; Harkness, Elaine F.; Heemskerk-Gerritsen, Bernadette A. M.; Holleczek, Bernd; Hollestelle, Antoinette; Hooning, Maartje J.; Hoover, Robert N.; Hopper, John L.; Howell, Anthony; Jakimovska, Milena; Jakubowska, Anna; John, Esther M.; Jones, Michael E.; Jung, Audrey; Kaaks, Rudolf; Kauppila, Saila; Keeman, Renske; Khusnutdinova, Elza; Kitahara, Cari M.; Ko, Yon-Dschun; Koutros, Stella; Kristensen, Vessela N.; Krüger, Ute; Kubelka-Sabit, Katerina; Kurian, Allison W.; Kyriacou, Kyriacos; Lambrechts, Diether; Lee, Derrick G.; Lindblom, Annika; Linet, Martha; Lissowska, Jolanta; Llaneza, Ana; Lo, Wing-Yee; MacInnis, Robert J.; Mannermaa, Arto; Manoochehri, Mehdi; Margolin, Sara; Martinez, Maria E.; McLean, Catriona; Meindl, Alfons; Menon, Usha; Nevanlinna, Heli; Newman, William G.; Nodora, Jesse; Offit, Kenneth; Olsson, Håkan; Orr, Nick; Park-Simon, Tjoung-Won; Patel, Alpa V.; Peto, Julian; Pita, Guillermo; Plaseska-Karanfilska, Dijana; Prentice, Ross; Punie, Kevin; Pylkäs, Katri; Radice, Paolo; Rennert, Gad; Romero, Atocha; Rüdiger, Thomas; Saloustros, Emmanouil; Sampson, Sarah; Sandler, Dale P.; Sawyer, Elinor J.; Schmutzler, Rita K.; Schoemaker, Minouk J.; Schöttker, Ben; Sherman, Mark E.; Shu, Xiao-Ou; Smichkoska, Snezhana; Southey, Melissa C.; Spinelli, John, 1955-; Swerdlow, Anthony J.; Tamimi, Rulla M.; Tapper, William J.; Taylor, Jack A.; Teras, Lauren R.; Terry, Mary B.; Torres, Diana; Troester, Melissa A.; Vachon, Celine M.; van Deurzen, Carolien H. M.; van Veen, Elke M.; Wagner, Philippe; Weinberg, Clarice R.; Wendt, Camilla; Wesseling, Jelle; Winqvist, Robert; Wolk, Alicja; Yang, Xiaohong R.; Zheng, Wei; Couch, Fergus J.; Simard, Jacques; Kraft, Peter; Easton, Douglas F.; Pharoah, Paul D. P.; Schmidt, Marjanka K.; García-Closas, Montserrat; Chatterjee, Nilanjan
Contributor
BC Cancer Research Centre
Publisher
BioMed Central
Date Issued
2022-01-04
Description
Background Genome-wide association studies (GWAS) have identified multiple common breast cancer susceptibility variants. Many of these variants have differential associations by estrogen receptor (ER) status, but how these variants relate with other tumor features and intrinsic molecular subtypes is unclear. Methods Among 106,571 invasive breast cancer cases and 95,762 controls of European ancestry with data on 173 breast cancer variants identified in previous GWAS, we used novel two-stage polytomous logistic regression models to evaluate variants in relation to multiple tumor features (ER, progesterone receptor (PR), human epidermal growth factor receptor 2 (HER2) and grade) adjusting for each other, and to intrinsic-like subtypes. Results Eighty-five of 173 variants were associated with at least one tumor feature (false discovery rate 
Subject
Breast cancer; Etiologic heterogeneity; Genetic predisposition; Common breast cancer susceptibility variants
Genre
Article
Type
Text
Language
eng
Date Available
2022-01-26
Provider
Vancouver : University of British Columbia Library
Rights
Attribution 4.0 International (CC BY 4.0)
DOI
10.14288/1.0406358
URI
http://hdl.handle.net/2429/80733
Affiliation
Medicine, Faculty of; Non UBC; Population and Public Health (SPPH), School of
Citation
Breast Cancer Research. 2022 Jan 04;24(1):2
Publisher DOI
10.1186/s13058-021-01484-x
Peer Review Status
Reviewed
Scholarly Level
Faculty; Researcher; Other
Copyright Holder
The Author(s)
Rights URI
http://creativecommons.org/licenses/by/4.0/
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Attribution 4.0 International (CC BY 4.0)