- Library Home /
- Search Collections /
- Open Collections /
- Browse Collections /
- UBC Faculty Research and Publications /
- Data access for the 1,000 Plants (1KP) project
Open Collections
UBC Faculty Research and Publications
Data access for the 1,000 Plants (1KP) project Matasci, Naim; Hung, Ling-Hong; Yan, Zhixiang; Carpenter, Eric J.; Wickett, Norman J.; Mirarab, Siavash; Nguyen, Nam; Warnow, Tandy; Ayyampalayam, Saravanaraj; Barker, Michael; et al.
Abstract
The 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages across the Viridiplantae (green plants) clade. Here, we describe how to access the data used in a phylogenomics analysis of the first 85 species, and how to visualize our gene and species trees. Users can develop computational pipelines to analyse these data, in conjunction with data of their own that they can upload. Computationally estimated protein-protein interactions and biochemical pathways can be visualized at another site. Finally, we comment on our future plans and how they fit within this scalable system for the dissemination, visualization, and analysis of large multi-species data sets.
Item Metadata
Title |
Data access for the 1,000 Plants (1KP) project
|
Creator |
Matasci, Naim; Hung, Ling-Hong; Yan, Zhixiang; Carpenter, Eric J.; Wickett, Norman J.; Mirarab, Siavash; Nguyen, Nam; Warnow, Tandy; Ayyampalayam, Saravanaraj; Barker, Michael; Burleigh, J. G.; Gitzendanner, Matthew A.; Wafula, Eric; Der, Joshua P.; dePamphilis, Claude W.; Roure, Béatrice; Philippe, Hervé; Ruhfel, Brad R.; Miles, Nicholas W.; Graham, Sean W.; Mathews, Sarah; Surek, Barbara; Melkonian, Michael; Soltis, Douglas E.; Soltis, Pamela S.; Rothfels, Carl; Pokorny, Lisa; Shaw, Jonathan A.; DeGironimo, Lisa; Stevenson, Dennis W.; Villarreal, Juan C.; Chen, Tao; Kutchan, Toni M.; Rolf, Megan; Baucom, Regina S.; Deyholos, Michael; Samudrala, Ram; Tian, Zhijian; Wu, Xiaolei; Sun, Xiao; Zhang, Yong; Wang, Jun; Leebens-Mack, Jim; Wong, Gane K.
|
Publisher |
BioMed Central
|
Date Issued |
2014-10-27
|
Description |
The 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages across the Viridiplantae (green plants) clade. Here, we describe how to access the data used in a phylogenomics analysis of the first 85 species, and how to visualize our gene and species trees. Users can develop computational pipelines to analyse these data, in conjunction with data of their own that they can upload. Computationally estimated protein-protein interactions and biochemical pathways can be visualized at another site. Finally, we comment on our future plans and how they fit within this scalable system for the dissemination, visualization, and analysis of large multi-species data sets.
|
Subject | |
Genre | |
Type | |
Language |
eng
|
Date Available |
2015-10-24
|
Provider |
Vancouver : University of British Columbia Library
|
Rights |
Attribution 4.0 International (CC BY 4.0)
|
DOI |
10.14288/1.0132648
|
URI | |
Affiliation | |
Citation |
GigaScience. 2014 Oct 27;3(1):17
|
Publisher DOI |
10.1186/2047-217X-3-17
|
Peer Review Status |
Reviewed
|
Scholarly Level |
Faculty
|
Copyright Holder |
Matasci et al.; licensee BioMed Central Ltd.
|
Rights URI | |
Aggregated Source Repository |
DSpace
|
Item Media
Item Citations and Data
Rights
Attribution 4.0 International (CC BY 4.0)