Open Collections

UBC Research Data

Data from: Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an Artichoke Bock, Dan G.; Kane, Nolan C.; Ebert, Daniel P.; Rieseberg, Loren H.

Description

<b>Abstract</b><br/>The perennial sunflower Helianthus tuberosus, known as Jerusalem Artichoke or Sunchoke, was cultivated in eastern North America before European contact. As such, it represents one of the few taxa that can support an independent origin of domestication in this region. Its tubers were adopted as a source of food and forage when the species was transferred to the Old World in the early 1600s, and are still used today. Despite the cultural and economic importance of this tuber crop species, its origin is debated. Competing hypotheses implicate the occurrence of polyploidization with or without hybridization, and list the annual sunflower H. annuus and five distantly related perennial sunflower species as potential parents. Here, we test these scenarios by skimming the genomes of diverse populations of Jerusalem Artichoke and its putative progenitors. We identify relationships among Helianthus taxa using complete plastomes (151 551 bp), partial mitochondrial genomes (196 853 bp) and 35S (8196 bp) and 5S (514 bp) ribosomal DNA. Our results refute the possibility that Jerusalem Artichoke is of H. annuus ancestry. We provide the first genetic evidence that this species originated recursively from perennial sunflowers of central-eastern North America via hybridization between tetraploid Hairy Sunflower and diploid Sawtooth Sunflower.; <b>Usage notes</b><br /><div class="o-metadata__file-usage-entry"><h4 class="o-heading__level3-file-title">Data_archiving_Bock_etal_2013_NewPhytologist</h4><div class="o-metadata__file-name"></div><div class="o-metadata__file-name"></div></div>

Item Metadata

Title	Data from: Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an Artichoke
Creator	Bock, Dan G.; Kane, Nolan C.; Ebert, Daniel P.; Rieseberg, Loren H.
Date Issued	2021-05-19
Description	<b>Abstract</b><br/>The perennial sunflower Helianthus tuberosus, known as Jerusalem Artichoke or Sunchoke, was cultivated in eastern North America before European contact. As such, it represents one of the few taxa that can support an independent origin of domestication in this region. Its tubers were adopted as a source of food and forage when the species was transferred to the Old World in the early 1600s, and are still used today. Despite the cultural and economic importance of this tuber crop species, its origin is debated. Competing hypotheses implicate the occurrence of polyploidization with or without hybridization, and list the annual sunflower H. annuus and five distantly related perennial sunflower species as potential parents. Here, we test these scenarios by skimming the genomes of diverse populations of Jerusalem Artichoke and its putative progenitors. We identify relationships among Helianthus taxa using complete plastomes (151 551 bp), partial mitochondrial genomes (196 853 bp) and 35S (8196 bp) and 5S (514 bp) ribosomal DNA. Our results refute the possibility that Jerusalem Artichoke is of H. annuus ancestry. We provide the first genetic evidence that this species originated recursively from perennial sunflowers of central-eastern North America via hybridization between tetraploid Hairy Sunflower and diploid Sawtooth Sunflower.; <b>Usage notes</b><br /><div class="o-metadata__file-usage-entry"><h4 class="o-heading__level3-file-title">Data_archiving_Bock_etal_2013_NewPhytologist</h4><div class="o-metadata__file-name"></div><div class="o-metadata__file-name"></div></div>
Subject	Other; Allopolyploid speciation; Helianthus decapetalus; Helianthus tuberosus; Helianthus maximiliani; polyploidy; ultra-barcoding; Helianthus divaricatus; polyploid parentage; Helianthus hirsutus; Helianthus strumosus; Helianthus giganteus; Helianthus grosseserratus
Geographic Location	Central-Eastern North America
Type	Dataset
Notes	Dryad version number: 1</p> Version status: submitted</p> Dryad curation status: Published</p> Sharing link: https://datadryad.org/stash/share/ikIIbmY7wDALypACgUDpJgGXfYPqMEk6SQZ-4M49ouo</p> Storage size: 1970909</p> Visibility: public</p>
Date Available	2020-06-24
Provider	University of British Columbia Library
License	This dataset is made available under a Creative Commons CC0 license with the following additional/modified terms and conditions: CC0 Waiver
DOI	10.14288/1.0397875
URI	https://doi.org/10.5683/SP2/QIFBY3
Publisher DOI	https://doi.org/10.5683/SP2/QIFBY3; https://doi.org/10.5061/dryad.138vs
Rights URI	https://creativecommons.org/publicdomain/zero/1.0/
Aggregated Source Repository	Dataverse

Item Media

Item Citations and Data

Licence

This dataset is made available under a Creative Commons CC0 license with the following additional/modified terms and conditions: CC0 Waiver