UBC Research Data

Data from: Direct and indirect genetic and fine-scale location effects on breeding date in song sparrows Germain, Ryan R.; Wolak, Matthew E.; Arcese, Peter; Losdat, Sylvain; Reid, Jane M.

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Abstract
Quantifying direct and indirect genetic effects of interacting females and males on variation in jointly expressed life-history traits is central to predicting microevolutionary dynamics. However, accurately estimating sex-specific additive genetic variances in such traits remains difficult in wild populations, especially if related individuals inhabit similar fine-scale environments. Breeding date is a key life-history trait that responds to environmental phenology and mediates individual and population responses to environmental change. However, no studies have estimated female (direct) and male (indirect) additive genetic and inbreeding effects on breeding date, and estimated the cross-sex genetic correlation, while simultaneously accounting for fine-scale environmental effects of breeding locations, impeding prediction of microevolutionary dynamics. We fitted animal models to 38 years of song sparrow (Melospiza melodia) phenology and pedigree data to estimate sex-specific additive genetic variances in breeding date, and the cross-sex genetic correlation, thereby estimating the total additive genetic variance while simultaneously estimating sex-specific inbreeding depression. We further fitted three forms of spatial animal model to explicitly estimate variance in breeding date attributable to breeding location, overlap among breeding locations and spatial autocorrelation. We thereby quantified fine-scale location variances in breeding date and quantified the degree to which estimating such variances affected the estimated additive genetic variances. The non-spatial animal model estimated nonzero female and male additive genetic variances in breeding date (sex-specific heritabilities: 0·07 and 0·02, respectively) and a strong, positive cross-sex genetic correlation (0·99), creating substantial total additive genetic variance (0·18). Breeding date varied with female, but not male inbreeding coefficient, revealing direct, but not indirect, inbreeding depression. All three spatial animal models estimated small location variance in breeding date, but because relatedness and breeding location were virtually uncorrelated, modelling location variance did not alter the estimated additive genetic variances. Our results show that sex-specific additive genetic effects on breeding date can be strongly positively correlated, which would affect any predicted rates of microevolutionary change in response to sexually antagonistic or congruent selection. Further, we show that inbreeding effects on breeding date can also be sex specific and that genetic effects can exceed phenotypic variation stemming from fine-scale location-based variation within a wild population.; Usage notes
Main_DatasetThis file contains the phenotypic data for the joint univariate animal model analysis of breeding date.Numeric_PedigreeThis file contains the numeric pedigree used to construct the inverted A (relationship) matrix for the joint univariate animal model analysis of breeding date.Unique_ID_All_Cell_SizesThis file contains the identity of each grid cell a given nest was located in for each version of the 'Grid' joint univariate animal model analysis of breeding date presented in the above paper.Overlap_Buff_50m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 50m^2) used to construct the S matrix for the '50 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_100m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 100m^2) used to construct the S matrix for the '100 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_150m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 150m^2) used to construct the S matrix for the '150 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_200m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 200m^2) used to construct the S matrix for the '200 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_250m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 250m^2) used to construct the S matrix for the '250 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_300m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 300m^2) used to construct the S matrix for the '300 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_400m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 400m^2) used to construct the S matrix for the '400 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_500m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 500m^2) used to construct the S matrix for the '500 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_600m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 600m^2) used to construct the S matrix for the '600 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_700m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 700m^2) used to construct the S matrix for the '700 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_800m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 800m^2) used to construct the S matrix for the '800 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_900m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 900m^2) used to construct the S matrix for the '900 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_1000m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 1000m^2) used to construct the S matrix for the '1000 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_1500m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 1500m^2) used to construct the S matrix for the '1500 m overlap' animal model presented in the supporting information of the above paperOverlap_Buff_2000m_All_NestsThis file contains a list of all overlapping nest buffers (buffer area = 2000m^2) used to construct the S matrix for the '2000 m overlap' animal model presented in the supporting information of the above paper

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