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transORF Foster, Leonard

Description

A tool that takes a FASTA nucleotide file and predicts all open reading frames in all six translation frames. The output is a FASTA amino acid file. This tool is useful for creating a protein library for database searching (where a good prediction is unavailable) if you don’t want to (or can’t) search your MS/MS spectra against a nucleotide library.

Item Metadata

Title
transORF
Creator
Foster, Leonard
Contributor
MacDonald, Stephen
Date Issued
2020-06-19
Description
A tool that takes a FASTA nucleotide file and predicts all open reading frames in all six translation frames. The output is a FASTA amino acid file. This tool is useful for creating a protein library for database searching (where a good prediction is unavailable) if you don’t want to (or can’t) search your MS/MS spectra against a nucleotide library.
Subject
Chemistry
Type
Dataset
Date Available
2020-06-19
Provider
University of British Columbia Library
License
CC-BY 4.0
DOI
10.14288/1.0391945
URI
https://doi.org/10.5683/SP2/5QDKLL
Publisher DOI
https://doi.org/10.5683/SP2/5QDKLL
Rights URI
http://creativecommons.org/licenses/by/4.0
Aggregated Source Repository
Dataverse

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License

CC-BY 4.0