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transORF Foster, Leonard
Description
A tool that takes a FASTA nucleotide file and predicts all open reading frames in all six translation frames. The output is a FASTA amino acid file. This tool is useful for creating a protein library for database searching (where a good prediction is unavailable) if you don’t want to (or can’t) search your MS/MS spectra against a nucleotide library.
Item Metadata
Title |
transORF
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Creator | |
Contributor | |
Date Issued |
2020-06-19
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Description |
A tool that takes a FASTA nucleotide file and predicts all open reading frames in all six translation frames. The output is a FASTA amino acid file. This tool is useful for creating a protein library for database searching (where a good prediction is unavailable) if you don’t want to (or can’t) search your MS/MS spectra against a nucleotide library.
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Subject | |
Type | |
Date Available |
2020-06-19
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Provider |
University of British Columbia Library
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License |
CC-BY 4.0
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DOI |
10.14288/1.0391945
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URI | |
Publisher DOI | |
Rights URI | |
Aggregated Source Repository |
Dataverse
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Item Media
Item Citations and Data
Licence
CC-BY 4.0