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scNMT-seq:MOSAIC, or Multi-Omic Supervised Integrative Clustering Arora, Arshi
Description
Arshi Arora is a Research Biostatistician in Dr. Ronglai Shen's lab at Memorial Sloan Kettering Cancer Center, https://www.mskcc.org/profile/arshi-arora Her research addressed the following question; We wish to address the problem of identifying localized molecular signatures with respect to an outcome of interest such as stage and lineage. This poses an interesting challenge in understanding heterogeneity in cell populations across multiple data modalities. We aim to illustrate that the application of a supervised integrative clustering will provide a more accurate delineation of cell subpopulation across genomic, epigenomic, and transcriptomic landscape that is directly relevant to the biological outcome of interest. Code is available at https://github.com/arorarshi/scNMT_seq_MOSAIC
Item Metadata
Title |
scNMT-seq:MOSAIC, or Multi-Omic Supervised Integrative Clustering
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Creator | |
Publisher |
Banff International Research Station for Mathematical Innovation and Discovery
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Date Issued |
2020-06-17T07:41
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Description |
Arshi Arora is a Research Biostatistician in Dr. Ronglai Shen's lab at Memorial Sloan Kettering Cancer Center, https://www.mskcc.org/profile/arshi-arora
Her research addressed the following question; We wish to address the problem of identifying localized molecular signatures with respect to an outcome of interest such as stage and lineage. This poses an interesting challenge in understanding heterogeneity in cell populations across multiple data modalities. We aim to illustrate that the application of a supervised integrative clustering will provide a more accurate delineation of cell subpopulation across genomic, epigenomic, and transcriptomic landscape that is directly relevant to the biological outcome of interest.
Code is available at https://github.com/arorarshi/scNMT_seq_MOSAIC
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Extent |
18.0 minutes
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Subject | |
Type | |
File Format |
video/mp4
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Language |
eng
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Notes |
Author affiliation: Memorial Sloan Kettering Cancer Center
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Series | |
Date Available |
2021-01-19
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Provider |
Vancouver : University of British Columbia Library
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Rights |
Attribution-NonCommercial-NoDerivatives 4.0 International
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DOI |
10.14288/1.0395663
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URI | |
Affiliation | |
Peer Review Status |
Unreviewed
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Scholarly Level |
Graduate
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Rights URI | |
Aggregated Source Repository |
DSpace
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Item Media
Item Citations and Data
Rights
Attribution-NonCommercial-NoDerivatives 4.0 International